Welcome to WDKToySite, a sample website driven by the GUS Web Development Kit. You are invited to explore this site to find out about the core functionalities of WDK. Enjoy the surfing! These queries find RNAs Find RNAs from a given organism that contain more than a specified number of ESTs in their assembly. Find RNAs with required assembly consistency score that contain ESTs from more than a specified number of libraries. These queries find ESTs Find ESTs from a given library Question that will return ESTs, some of which have null values for their atttributes Question that returns the RNA that belongs to the given EST; for use in a Nested Record Question that returns ESTs that belong to the given RNA; for use in a Nested Record List These questions are for data dumps This question find all RNAs to dump in GFF format Data contents from XML data sources Retrieve news from XML data source Retrieve CNN headline news from XML data source, and converted it on the fly Resource of PlasmoDB analysis pipeline RNA $$primaryKey$$ is from $$taxon_name$$. $$NumSeqs$$ and a.taxon_id in ($$ApiTaxon$$) ]]> $$AssemblyConsistency$$ group by aseq.assembly_na_sequence_id having count (distinct lib.dbest_id) >= $$NumEstLibs$$ ]]> select a.na_sequence_id from WDKTestAssembly a, WDKTestAssemblySequence aseq where aseq.assembly_na_sequence_id = a.na_sequence_id and aseq.na_sequence_id = $$na_sequence_id$$ (select distinct e.est_id from WDKTestEst e, WDkTestLibrary l where e.library_id = l.library_id and l.library_id in ($$EstLib$$)) UNION (select distinct e.est_id from WDKTestEst e, WDkTestLibrary l where e.library_id = l.library_id and l.library_id in ($$EstLib$$)) 9644240 and est_id < 9644245 ]]> select taxon_name, isoform_count from (select a.na_sequence_id, tn.name as taxon_name, count(*) as isoform_count from WDKTestAssembly a, WDKTestTaxonName tn, WDKTestAssemblySequence aseq where a.taxon_id = tn.taxon_id and a.na_sequence_id = aseq.assembly_na_sequence_id group by a.na_sequence_id, tn.name) tmp where tmp.na_sequence_id = $$primaryKey$$ select a.assembly_consistency, a.contains_mrna, a.number_of_contained_sequences, a.sequence from WDKTestAssembly a, WDKTestTaxonName tn where a.na_sequence_id = '$$primaryKey$$' and a.taxon_id = tn.taxon_id select aseq.na_sequence_id as est_id, 'DT.' || a.na_sequence_id as source_id, aseq.sequence_start, aseq.sequence_end, aseq.quality_start, aseq.quality_end from WDKTestAssemblySequence aseq, WDKTestAssembly a where a.na_sequence_id = $$primaryKey$$ and a.na_sequence_id = aseq.assembly_na_sequence_id select est.est_id from WDKTestAssemblySequence aseq, WDKTestAssembly a, WDKTestEst est where a.na_sequence_id = $$primaryKey$$ and a.na_sequence_id = aseq.assembly_na_sequence_id and est.na_sequence_id = aseq.na_sequence_id (select e.accession as source_id, e.na_sequence_id from WDKTestEst e where e.est_id = $$primaryKey$$) UNION (select e.accession as source_id, e.na_sequence_id from WDKTestEst e where e.est_id = $$primaryKey$$) select a.na_sequence_id as assembly_id from WDKTestEst e, WDKTestAssemblySequence aseq, WdkTestAssembly a where e.est_id = $$primaryKey$$ and e.na_sequence_id = aseq.na_sequence_id and aseq.assembly_na_sequence_id = a.na_sequence_id select l.dbest_name, l.anatomy_id from WDKTestEst e, WDKTestLibrary l where e.est_id = $$primaryKey$$ and e.library_id = l.library_id select distinct name as term, taxon_id as internal from WDKTestTaxonName where name in ('Neospora caninum', 'Plasmodium falciparum', 'Eimeria tenella', 'Plasmodium yoelii', 'Sarcocystis neurona', 'Toxoplasma gondii') select distinct dbest_name as term, library_id as internal from WDKTestLibrary where dbest_name like 'N%' select 'ChrNNN' as seqid, 'WDKToy' as source, 'toyRNA' as type, 10 * rownum as fstart, 10 * rownum + 5 as fend, '.' as score, '.' as strand, '.' as phase, a.na_sequence_id as attr_id, 'aToyRna' as attr_name, 'Rna of taxon ' || taxon_id as attr_description from WDKTestAssembly a where a.na_sequence_id = $$primaryKey$$ select 'ChrNNN' as seqid, 'WDKToy' as source, 'toyRNA' as type, 10 * rownum as fstart, 10 * rownum + 5 as fend, '.' as score, '.' as strand, '.' as phase, aseq.na_sequence_id as attr_id, 'aToyEst' as attr_name, a.na_sequence_id as attr_parent, aseq.sequence_start || ':' || aseq.sequence_end as attr_description from WDKTestAssemblySequence aseq, WDKTestAssembly a where a.na_sequence_id = $$primaryKey$$ and a.na_sequence_id = aseq.assembly_na_sequence_id